Nextflow Triathloncourse¶
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Resumo do curso
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Nextflow Triathlon is a fast-track introduction to the Nextflow ecosystem, from running your first pipeline to launching production-scale workflows on Seqera Platform.
Working through three successive disciplines, you will learn the essentials of running and understanding Nextflow pipelines, discover the nf-core community pipeline ecosystem, and get hands-on experience with Seqera Platform.
You will take away the confidence to run workflows at scale using Nextflow and Seqera Platform.
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Informações adicionais
Requisitos técnicos
Você precisará de uma conta no GitHub OU de uma instalação local do Nextflow. Consulte Opções de ambiente para mais detalhes.
Objetivos de aprendizado
- Launch and manage Nextflow pipelines from the command line
- Understand how channels and operators enable efficient multi-input, multi-step workflows
- Use containers to manage software dependencies and ensure reproducibility
- Find, retrieve, and configure nf-core community pipelines
- Launch and monitor pipelines on Seqera Platform
- Scale up to production-level workflows using Seqera Platform
Público e pré-requisitos
- Audience: This course is designed for learners who are new to Nextflow and want a fast-track introduction covering the command line, nf-core, and Seqera Platform.
- Skills: Some familiarity with the command line, basic scripting concepts and common file formats is assumed.
- Domain: The exercises in Parts 1 and 2 are domain-agnostic. Part 3 uses a bioinformatics pipeline, but no prior scientific domain knowledge is required.
Course overview¶
This course is hands-on, with goal-oriented exercises structured to introduce information gradually.
Lesson plan¶
| Course chapter | Summary | Estimated duration |
|---|---|---|
| Part 1: Run Nextflow | Launch and manage Nextflow pipelines, understand essential workflow mechanics, and configure execution | 45 mins |
| Part 2: Run nf-core | Find an nf-core pipeline, run it using its test profile, and configure its execution | 45 mins |
| Part 3: Run on Seqera | Launch and manage Nextflow pipelines with Seqera (web interface and CLI) and import a new pipeline from a GitHub repository | 45 mins |
Ready to take the course?